BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008G01LP1|AL425911
(822 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig649 1130 0.0
3x_Contig832 287 2e-77
>3x_Contig649
Length = 2488
Score = 1130 bits (570), Expect = 0.0
Identities = 618/632 (97%), Gaps = 14/632 (2%)
Strand = Plus / Plus
Query: 1 tttttctttacctaaaatatatatattaattagaaaatgtttgtctatggcttcataagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1870 tttttctttacctaaaatatatatattaattagaaaatgtttgtctatggcttcataagt 1929
Query: 61 tgcataatcaagtctaatggtgatcgacaagattttagtccaattttacccagtatctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1930 tgcataatcaagtctaatggtgatcgacaagattttagtccaattttacccagtatctta 1989
Query: 121 aacggtcaagacacgtagagtgttggagttaccgacaccagcggcgaaaccttgaatggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1990 aacggtcaagacacgtagagtgttggagttaccgacaccagcggcgaaaccttgaatggt 2049
Query: 181 gacaatggtgtcaccgtcaaccaaaattccgaattccttggccttcttgacaccgaagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2050 gacaatggtgtcaccgtcaaccaaaattccgaattccttggccttcttgacaccgaagtt 2109
Query: 241 gattctcttttcaacatcgacagtccattcggagtcagaggattcatcgtatacgaatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2110 gattctcttttcaacatcgacagtccattcggagtcagaggattcatcgtatacgaatgg 2169
Query: 301 gaagacacctctatatagatgagagaatctagcagctcttgggtttctagtaaccataac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2170 gaagacacctctatatagatgagagaatctagcagctcttgggtttctagtaaccataac 2229
Query: 361 aattgggacatttggcttgtacttggcaaccaatcttggagtgtcaccggtggtggatag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2230 aattgggacatttggcttgtacttggcaaccaatcttggagtgtcaccggtggtggatag 2289
Query: 421 gacaatcaaagctctggccttttgttcaaatacagcagaaacagaagcagcagcgatagt 480
||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2290 gacaatcaaagct----------gttcaaatacagcagaaacagaagcagcagcgatagt 2339
Query: 481 ttcagtggttgaggttggctttggagtcaagttt-cttaagtcatcgtaagttgggatgt 539
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2340 ttcagtggttgaggttggctttggagtcaagtttacttaagtcatcgtaagttgggatgt 2399
Query: 540 atgggatggcttgttcagcaatcaaagcagtttcagccatggtcttaacggcattgattg 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2400 -tgggatggcttgttcagcaatcaaagcagtttcagccatggtcttaacggcattgattg 2458
Query: 600 ggtagttacccttggcagtttcaccagacaac 631
||||||||||||||||| |||||||||||||
Sbjct: 2459 ggtagttacccttggca--ttcaccagacaac 2488
>3x_Contig832
Length = 3863
Score = 287 bits (145), Expect = 2e-77
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 678 cttcagctctggttggtcttgggttgtaggtcatggattccaacatttgggtagcacaga 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3863 cttcagctctggttggtcttgggttgtaggtcatggattccaacatttgggtagcacaga 3804
Query: 738 taactggcttaccagccaagttacacttagcaatcaacttcttttgcacagcaaacactt 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3803 taactggcttaccagccaagttacacttagcaatcaacttcttttgcacagcaaacactt 3744
Query: 798 gaggagctggaatttcaatacccaa 822
|||||||||||||||||||||||||
Sbjct: 3743 gaggagctggaatttcaatacccaa 3719
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6230
Number of Sequences: 1807
Number of extensions: 6230
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 2
length of query: 822
length of database: 10,358,551
effective HSP length: 16
effective length of query: 806
effective length of database: 10,329,639
effective search space: 8325689034
effective search space used: 8325689034
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)